RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA975724 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6049163 6049163 PRJNA975724_S_NODE_345_length_1104_cov_2.108632_g292_i0 PRJNA975724 345 1104 2.108632 23.27929728 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 235 1.04e-56   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g292 i0 80.906 28.9175724637681 309 50 28 8 18 324 20147 19846 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 31925 235 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
14973790 14973790 PRJNA975724_S_NODE_31772_length_342_cov_2.289963_g31591_i0 PRJNA975724 31772 342 2.289963 7.83167346 Spongospora subterranea 70186 SAR_Eukaryotes SAR_Eukaryotes 128 5.22e-25   NTclustered gi|1150151083|ref|NC_034004.1| 70186 g31591 i0 80.791 30.9766081871345 177 23 49 5 153 320 20232 20406 Spongospora subterranea mitochondrion, complete genome blastn 10594 128 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;