RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA975724 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6048547 6048547 PRJNA975724_S_NODE_10205_length_448_cov_7.034667_g10024_i0 PRJNA975724 10205 448 7.034667 31.51530816 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 110 2.54e-19   NTclustered gi|470414640|ref|XM_004336659.1| 1257118 g10024 i0 80.405 0.772321428571429 148 25 33 4 302 447 1511 1366 Acanthamoeba castellanii str. Neff AcetylCoA carboxylase, carboxyltransferase component, putative (ACA1_022220), partial mRNA blastn 346 110 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7323371 7323371 PRJNA975724_S_NODE_11866_length_434_cov_10.365651_g11685_i0 PRJNA975724 11866 434 10.365651 44.98692534 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 148 5.2e-31   NTclustered gi|470423488|ref|XM_004337555.1| 1257118 g11685 i0 79.263 45.46313364055301 217 41 50 4 59 273 367 581 Acanthamoeba castellanii str. Neff ribosomal protein L23, putative (ACA1_164710), partial mRNA blastn 19731 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14973435 14973435 PRJNA975724_S_NODE_1752_length_690_cov_4.753647_g1590_i0 PRJNA975724 1752 690 4.753647 32.8001643 Cochliopodium minus 313997 Discosea other_Eukaryota 970 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1590 i0 94.662 47.5304347826087 637 15 91 14 62 690 4 629 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 32796 970 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
16250124 16250124 PRJNA975724_S_NODE_82153_length_248_cov_1.148571_g81972_i0 PRJNA975724 82153 248 1.148571 2.84845608 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 137 6.019999999999999e-28   NTclustered gi|470375091|ref|XM_004333111.1| 1257118 g81972 i0 82.716 45.0685483870968 162 21 65 4 76 235 229 73 Acanthamoeba castellanii str. Neff high molecular weight heat shock protein (ACA1_387860), partial mRNA blastn 11177 137 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17523502 17523502 PRJNA975724_S_NODE_15754_length_408_cov_5.453731_g15573_i0 PRJNA975724 15754 408 5.453731 22.25122248 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 126 2.2799999999999998e-24   NTclustered gi|470494240|ref|XM_004346562.1| 1257118 g15573 i0 77.778 3.60294117647059 216 40 52 8 163 374 1110 899 Acanthamoeba castellanii str. Neff S(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase (ACA1_230530), partial mRNA blastn 1470 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21349376 21349376 PRJNA975724_S_NODE_8477_length_466_cov_12.050891_g8296_i0 PRJNA975724 8477 466 12.050891 56.15715206 Vannellidae sp. 2491907 Discosea other_Eukaryota 224 9.069999999999999e-54   NTclustered gi|1523769313|gb|MH535955.1| 2491907 g8296 i0 80.583 35.7124463519313 309 44 66 12 90 395 700 405 Vannellidae sp. strain 147SVA_C2 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 16642 224 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   Vannellidae sp.
23900072 23900072 PRJNA975724_S_NODE_959_length_814_cov_3.840756_g820_i0 PRJNA975724 959 814 3.840756 31.26375384 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 514 8.679999999999999e-141   NTclustered gi|470375091|ref|XM_004333111.1| 1257118 g820 i0 80.689 84.3636363636364 668 123 82 6 9 673 684 20 Acanthamoeba castellanii str. Neff high molecular weight heat shock protein (ACA1_387860), partial mRNA blastn 68672 514 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;