RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA975724 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14973286 14973286 PRJNA975724_S_NODE_10972_length_441_cov_13.228261_g10791_i0 PRJNA975724 10972 441 13.228261 58.33663101 Polychytrium aggregatum 110093 Fungi Fungi 206 3.0899999999999996e-48   NTclustered gi|2432142886|ref|XM_053110559.1| 110093 g10791 i0 79.344 56.0340136054422 305 53 67 7 62 358 38 340 Polychytrium aggregatum 60S ribosomal protein L42 (BJ171DRAFT_500193), mRNA blastn 24711 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14974151 14974151 PRJNA975724_S_NODE_46212_length_305_cov_1.836207_g46031_i0 PRJNA975724 46212 305 1.836207 5.60043135 Spizellomyces punctatus 109760 Fungi Fungi 183 9.659999999999997e-42   NTclustered gi|1026953358|ref|XM_016749715.1| 645134 g46031 i0 82.775 8.27540983606557 209 32 68 4 14 220 329 535 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S14 (SPPG_01396), mRNA blastn 2524 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
18797300 18797300 PRJNA975724_S_NODE_14735_length_414_cov_13.149560_g14554_i0 PRJNA975724 14735 414 13.14956 54.4391784 Polychytrium aggregatum 110093 Fungi Fungi 147 1.77e-30   NTclustered gi|2432156332|ref|XM_053115009.1| 110093 g14554 i0 79.535 9.73671497584541 215 37 51 6 1 213 514 723 Polychytrium aggregatum Manganese/iron superoxide dismutase (BJ171DRAFT_600410), mRNA blastn 4031 147 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19118187 19118187 PRJNA975724_S_NODE_355_length_1088_cov_6.054187_g302_i0 PRJNA975724 355 1088 6.054187 65.86955456 Entophlyctis 64501 Fungi Fungi 172 8.139999999999999e-38   NTclustered gi|1866582500|gb|MT730675.1| 109932 g302 i0 77.108 15.8556985294118 332 55 41 17 743 1063 4672 4351 Entophlyctis luteolus isolate JEL0129 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17251 172 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
23897810 23897810 PRJNA975724_S_NODE_10859_length_442_cov_25.682927_g10678_i0 PRJNA975724 10859 442 25.682927 113.51853734 Polychytrium aggregatum 110093 Fungi Fungi 195 6.71e-45   NTclustered gi|2432129762|ref|XM_053108984.1| 110093 g10678 i0 82.128 1.60859728506787 235 34 52 7 32 262 104 334 Polychytrium aggregatum 60S ribosomal protein L37 (BJ171DRAFT_484391), mRNA blastn 711 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
25171501 25171501 PRJNA975724_S_NODE_11980_length_433_cov_35.630556_g11799_i0 PRJNA975724 11980 433 35.630556 154.28030748 Polychytrium aggregatum 110093 Fungi Fungi 135 4.03e-27   NTclustered gi|2432139102|ref|XM_053107495.1| 110093 g11799 i0 92.553 16.3741339491917 94 7 22 0 36 129 213 306 Polychytrium aggregatum ribosomal protein L34e-domain-containing protein (BJ171DRAFT_421619), partial mRNA blastn 7090 135 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;