RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA975724 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9873684 9873684 PRJNA975724_S_NODE_1668_length_697_cov_2.687500_g1508_i0 PRJNA975724 1668 697 2.6875 18.731875 Acidobacteriota bacterium 1978231 Bacteria Bacteria 780 0   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g1508 i0 87.776 340.200860832138 679 68 96 14 1 672 317922 317252 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 237120 780 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
18798751 18798751 PRJNA975724_S_NODE_7135_length_483_cov_13.078049_g6954_i0 PRJNA975724 7135 483 13.078049 63.16697667 Geothrix sp. 1962974 Bacteria Bacteria 56.5 0.004   NTclustered gi|2515262989|gb|CP126625.1| 1962974 g6954 i0 100 0.12008281573499 30 0 6 0 284 313 1874545 1874516 MAG: Geothrix sp. isolate L227-G1 chromosome, complete genome blastn 58 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.
21348118 21348118 PRJNA975724_S_NODE_377_length_1070_cov_2.296891_g321_i0 PRJNA975724 377 1070 2.296891 24.5767337 Acidobacteriota bacterium 1978231 Bacteria Bacteria 1496 0   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g321 i0 91.922 173.084112149533 1077 75 100 11 1 1070 3300090 3299019 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 185200 1496 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;