RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA975724 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18798109 18798109 PRJNA975724_S_NODE_4655_length_531_cov_2.124454_g4476_i0 PRJNA975724 4655 531 2.124454 11.28085074 uncultured delta proteobacterium 34034 Bacteria Bacteria 641 2.4299999999999993e-179   NTclustered gi|374854163|dbj|AP011765.1| 34034 g4476 i0 88.555 129.195856873823 533 56 100 4 1 531 12910 13439 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 68603 641 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22944560 22944560 PRJNA975724_S_NODE_82518_length_248_cov_0.880000_g82337_i0 PRJNA975724 82518 248 0.88 2.1824 Bdellovibrionota 3018035 Bacteria Bacteria 459 1.13e-124   NTclustered gi|343206979|gb|JN371756.1| 34034 g82337 i0 100 96.9758064516129 248 0 100 0 1 248 389 142 Uncultured delta proteobacterium clone B12-54 16S ribosomal RNA gene, partial sequence blastn 24050 459 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;