contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3495385 | 3495385 | PRJNA971676_P_NODE_2483_length_487_cov_1.857488_g2394_i0 | PRJNA971676 | 2483 | 487 | 1.857488 | 9.04596656 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 255 | 3.37e-63 | NTclustered | gi|675207712|ref|XM_008914493.1| | 761204 | g2394 | i0 | 79.515 | 96.3326488706365 | 371 | 66 | 75 | 8 | 47 | 412 | 393 | 28 | Phytophthora parasitica INRA-310 hsp70-like protein partial mRNA | blastn | 46914 | 255 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 3818414 | 3818414 | PRJNA971676_P_NODE_19343_length_245_cov_0.895349_g19254_i0 | PRJNA971676 | 19343 | 245 | 0.895349 | 2.19360505 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 124 | 4.62e-24 | NTclustered | gi|2795061008|ref|XM_067940276.1| | 4785 | g19254 | i0 | 80.745 | 28.1102040816327 | 161 | 29 | 65 | 2 | 5 | 164 | 360 | 201 | Phytophthora cinnamomi 60S ribosomal protein L23a (IUM83_15460), partial mRNA | blastn | 6887 | 124 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 11148198 | 11148198 | PRJNA971676_P_NODE_1649_length_586_cov_1.200780_g1562_i0 | PRJNA971676 | 1649 | 586 | 1.20078 | 7.0365708 | Lagenidium giganteum | 4803 | SAR_Eukaryotes | SAR_Eukaryotes | 401 | 4.989999999999999e-107 | NTclustered | gi|1219685856|gb|KY965925.1| | 1440116 | g1562 | i0 | 80.556 | 80.598976109215 | 540 | 89 | 90 | 15 | 16 | 544 | 203 | 737 | Lagenidium giganteum f. caninum isolate UF15-01 heat shock protein 90 (hsp90) gene, partial cds | blastn | 47231 | 401 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Pythiales | Pythiaceae | Lagenidium | Lagenidium giganteum | ||
| 13698300 | 13698300 | PRJNA971676_P_NODE_19051_length_246_cov_0.890173_g18962_i0 | PRJNA971676 | 19051 | 246 | 0.890173 | 2.18982558 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 226 | 1.2399999999999997e-54 | NTclustered | gi|695448559|ref|XM_009536718.1| | 67593 | g18962 | i0 | 83.74 | 67.6626016260163 | 246 | 32 | 99 | 6 | 1 | 245 | 630 | 868 | Phytophthora sojae ATP synthase beta subunit mRNA | blastn | 16645 | 226 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 17522915 | 17522915 | PRJNA971676_P_NODE_9834_length_288_cov_1.074419_g9745_i0 | PRJNA971676 | 9834 | 288 | 1.074419 | 3.09432672 | Phytophthora hydrogena | 1286608 | SAR_Eukaryotes | SAR_Eukaryotes | 217 | 8.93e-52 | NTclustered | gi|1233050041|gb|KX252277.1| | 1286608 | g9745 | i0 | 85.167 | 72.6354166666667 | 209 | 31 | 73 | 0 | 23 | 231 | 222 | 14 | Phytophthora hydrogena isolate 44G8(authentic) heat shock protein 90 gene, partial cds | blastn | 20919 | 217 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora hydrogena |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;