RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA971676 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9872781 9872781 PRJNA971676_P_NODE_15808_length_249_cov_0.875000_g15719_i0 PRJNA971676 15808 249 0.875 2.17875 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 154 6.01e-33   NTclustered gi|2108204948|gb|CP070704.1| 2026735 g15719 i0 79.821 0.895582329317269 223 35 87 10 19 235 824746 824528 MAG: Deltaproteobacteria bacterium isolate bin55 chromosome blastn 223 154 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
12423871 12423871 PRJNA971676_P_NODE_22490_length_242_cov_0.911243_g22401_i0 PRJNA971676 22490 242 0.911243 2.20520806 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 270 5.53e-68   NTclustered gi|2108340089|gb|CP070660.1| 2026735 g22401 i0 87.029 0.987603305785124 239 31 99 0 4 242 168310 168072 MAG: Deltaproteobacteria bacterium isolate bin79 chromosome blastn 239 270 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
16247318 16247318 PRJNA971676_P_NODE_10153_length_285_cov_1.339623_g10064_i0 PRJNA971676 10153 285 1.339623 3.81792555 Pendulispora brunnea 2905690 Bacteria Bacteria 333 8.4e-87   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g10064 i0 87.713 131.638596491228 293 26 100 6 1 285 7408948 7408658 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 37517 333 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;