RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA971676 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4772926 4772926 PRJNA971676_P_NODE_16404_length_249_cov_0.875000_g16315_i0 PRJNA971676 16404 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 361 3.3e-95   NTclustered gi|290971770|ref|XM_002668606.1| 5762 g16315 i0 93.416 4.66666666666667 243 16 98 0 1 243 257 15 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_60075), partial mRNA blastn 1162 361 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12423919 12423919 PRJNA971676_P_NODE_350_length_1142_cov_3.134705_g289_i0 PRJNA971676 350 1142 3.134705 35.7983311 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 830 0   NTclustered gi|290991940|ref|XM_002678547.1| 5762 g289 i0 80.79 92.7880910683012 1088 185 94 19 60 1135 45 1120 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56107), mRNA blastn 105964 830 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14972460 14972460 PRJNA971676_P_NODE_12972_length_258_cov_1.572973_g12883_i0 PRJNA971676 12972 258 1.572973 4.05827034 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 327 3.48e-85   NTclustered gi|290992577|ref|XM_002678865.1| 5762 g12883 i0 90.984 0.945736434108527 244 20 94 2 9 251 216 458 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_83081), partial mRNA blastn 244 327 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;