RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA971676 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4772823 4772823 PRJNA971676_P_NODE_10904_length_277_cov_2.196078_g10815_i0 PRJNA971676 10904 277 2.196078 6.08313606 Polychytrium aggregatum 110093 Fungi Fungi 191 5.18e-44   NTclustered gi|2432145256|ref|XM_053110808.1| 110093 g10815 i0 79.061 98.7292418772563 277 58 100 0 1 277 1234 958 Polychytrium aggregatum hsp71-like protein (BJ171DRAFT_502900), mRNA blastn 27348 191 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
7322668 7322668 PRJNA971676_P_NODE_1886_length_552_cov_2.311065_g1798_i0 PRJNA971676 1886 552 2.311065 12.7570788 Polychytrium aggregatum 110093 Fungi Fungi 200 1.8299999999999998e-46   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g1798 i0 76.485 25.2228260869565 404 73 72 16 88 483 523 134 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13923 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
16247382 16247382 PRJNA971676_P_NODE_13393_length_254_cov_1.348066_g13304_i0 PRJNA971676 13393 254 1.348066 3.42408764 Polychytrium aggregatum 110093 Fungi Fungi 104 6.28e-18   NTclustered gi|2432132859|ref|XM_053107418.1| 110093 g13304 i0 84.615 15.5236220472441 104 16 41 0 1 104 881 984 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_420039), partial mRNA blastn 3943 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;