RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA971676 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8597580 8597580 PRJNA971676_P_NODE_18527_length_246_cov_0.890173_g18438_i0 PRJNA971676 18527 246 0.890173 2.18982558 Pandorina colemaniae 47786 Plants Plants 56.5 0.002   NTclustered gi|1808706855|gb|MH511724.1| 47786 g18438 i0 94.444 0.146341463414634 36 2 15 0 7 42 302 267 Pandorina colemaniae photosystem II protein L (psbL), photosystem II cytochrome b559 beta subunit (psbF), beta subunit of RNA polymerase (rpoBb), beta subunit of RNA polymerase (rpoBa), cytochrome b6/f complex subunit 4 (petD), and protochlorophyllide reductase subunit B (chlB) genes, complete cds; plastid blastn 36 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pandorina Pandorina colemaniae
11470184 11470184 PRJNA971676_P_NODE_10349_length_283_cov_1.466667_g10260_i0 PRJNA971676 10349 283 1.466667 4.15066761 Opisthokonta 33154 Plants Plants 99 3.31e-16   NTclustered gi|612395756|ref|XM_007513336.1| 41875 g10260 i0 80.303 1.93992932862191 132 24 46 2 101 231 171 41 Bathycoccus prasinos 40S ribosomal protein S29 (Bathy04g01450), partial mRNA blastn 549 100 0.99 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
14020392 14020392 PRJNA971676_P_NODE_7471_length_320_cov_4.514170_g7382_i0 PRJNA971676 7471 320 4.51417 14.445344 Chlorophyta 3041 Plants Plants 279 1.26e-70   NTclustered gi|926766867|ref|XM_014037032.1| 145388 g7382 i0 85.878 80.928125 262 37 82 0 59 320 1 262 Monoraphidium neglectum Tubulin alpha-1 chain mRNA blastn 25897 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
16247447 16247447 PRJNA971676_P_NODE_17233_length_248_cov_0.880000_g17144_i0 PRJNA971676 17233 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 187 5.8899999999999985e-43   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g17144 i0 85.795 15.7661290322581 176 25 71 0 71 246 605 780 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 3910 187 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20071500 20071500 PRJNA971676_P_NODE_9796_length_288_cov_1.427907_g9707_i0 PRJNA971676 9796 288 1.427907 4.11237216 Micromonas commoda 296587 Plants Plants 241 5.3e-59   NTclustered gi|255079947|ref|XM_002503508.1| 296587 g9707 i0 83.984 2.01388888888889 256 35 88 5 5 257 463 211 Micromonas commoda mitochondrial carrier family mRNA blastn 580 241 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
21346872 21346872 PRJNA971676_P_NODE_7237_length_324_cov_1.880478_g7148_i0 PRJNA971676 7237 324 1.880478 6.09274872 Auxenochlorella protothecoides 3075 Plants Plants 130 1.37e-25   NTclustered gi|760445578|ref|XM_011401556.1| 3075 g7148 i0 88.679 2.55246913580247 106 12 33 0 181 286 105 210 Auxenochlorella protothecoides 40S ribosomal protein S11 partial mRNA blastn 827 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;