RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA971676 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8597510 8597510 PRJNA971676_P_NODE_14747_length_250_cov_0.870056_g14658_i0 PRJNA971676 14747 250 0.870056 2.17514 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 291 4.41e-74   NTclustered gi|2107985377|gb|CP070781.1| 2026734 g14658 i0 87.6 1 250 31 100 0 1 250 568374 568125 MAG: Dehalococcoidia bacterium isolate bin168 chromosome blastn 250 291 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
12423914 12423914 PRJNA971676_P_NODE_3290_length_434_cov_0.803324_g3201_i0 PRJNA971676 3290 434 0.803324 3.48642616 Chloroflexota bacterium 2026724 Bacteria Bacteria 364 4.74e-96   NTclustered gi|2107952176|gb|CP070793.1| 2026724 g3201 i0 82.464 1.57142857142857 422 68 97 1 13 434 1336580 1336165 MAG: Chloroflexi bacterium isolate bin1433 chromosome blastn 682 364 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
20071346 20071346 PRJNA971676_P_NODE_23316_length_241_cov_0.916667_g23227_i0 PRJNA971676 23316 241 0.916667 2.20916747 Chloroflexota bacterium 2026724 Bacteria Bacteria 211 3.38e-50   NTclustered gi|2107952176|gb|CP070793.1| 2026724 g23227 i0 85.437 1.3402489626556 206 27 99 3 38 241 1281866 1282070 MAG: Chloroflexi bacterium isolate bin1433 chromosome blastn 323 211 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;