RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA971676 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6047898 6047898 PRJNA971676_P_NODE_23425_length_241_cov_0.916667_g23336_i0 PRJNA971676 23425 241 0.916667 2.20916747 Phycisphaerales bacterium 2052180 Bacteria Bacteria 69.4 2.15e-7   NTclustered gi|2108146915|gb|CP070723.1| 2052180 g23336 i0 84.507 0.294605809128631 71 9 29 2 130 199 1274866 1274935 MAG: Phycisphaerales bacterium isolate bin463 chromosome blastn 71 69.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
20071210 20071210 PRJNA971676_P_NODE_14396_length_251_cov_0.865169_g14307_i0 PRJNA971676 14396 251 0.865169 2.17157419 Phycisphaerales bacterium 2052180 Bacteria Bacteria 204 5.93e-48   NTclustered gi|2108295868|gb|CP070675.1| 2052180 g14307 i0 88.235 0.677290836653386 170 20 68 0 51 220 136010 136179 MAG: Phycisphaerales bacterium isolate bin71 chromosome blastn 170 204 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;