RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA971676" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA971676 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
944621 944621 PRJNA971676_P_NODE_1841_length_557_cov_33.832645_g1753_i0 PRJNA971676 1841 557 33.832645 188.44783265 Ripella sp. 805 1217113 Discosea other_Eukaryota 863 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1753 i0 95.118 99.6822262118492 553 18 98 7 11 557 1 550 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55523 863 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
9872833 9872833 PRJNA971676_P_NODE_1908_length_549_cov_2.750000_g1820_i0 PRJNA971676 1908 549 2.75 15.0975 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 370 1.3100000000000002e-97   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g1820 i0 79.159 83.1967213114754 547 104 99 8 1 542 3 544 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 45675 370 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13698455 13698455 PRJNA971676_P_NODE_6051_length_345_cov_1.132353_g5962_i0 PRJNA971676 6051 345 1.132353 3.90661785 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 340 6.219999999999999e-89   NTclustered gi|470439766|ref|XM_004339180.1| 1257118 g5962 i0 85.119 10.8753623188406 336 46 97 4 12 345 1271 938 Acanthamoeba castellanii str. Neff Inositol3-phosphate synthase (ACA1_058810), partial mRNA blastn 3752 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15294446 15294446 PRJNA971676_P_NODE_2392_length_495_cov_10.672986_g2303_i0 PRJNA971676 2392 495 10.672986 52.8312807 Vannellidae 95227 Discosea other_Eukaryota 719 0   NTclustered gi|327391626|gb|HM363624.1| 1002216 g2303 i0 93.214 100.678787878788 501 15 100 14 1 495 1667 1180 Vannella sp. GERB small subunit ribosomal RNA gene, partial sequence blastn 49836 723 0.994467496542185 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERB
16247354 16247354 PRJNA971676_P_NODE_1233_length_661_cov_2.619048_g1147_i0 PRJNA971676 1233 661 2.619048 17.31190728 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 486 1.5199999999999998e-132   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g1147 i0 80.398 92.0680786686838 653 116 98 10 15 661 1668 2314 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 60857 486 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16247520 16247520 PRJNA971676_P_NODE_2153_length_518_cov_21.539326_g2064_i0 PRJNA971676 2153 518 21.539326 111.57370868 Ripella decalvata 2047822 Discosea other_Eukaryota 800 0   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g2064 i0 94.656 100.725868725869 524 14 100 8 1 518 1044 529 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 52176 800 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
17522906 17522906 PRJNA971676_P_NODE_9474_length_292_cov_1.054795_g9385_i0 PRJNA971676 9474 292 1.054795 3.0800014 Acytostelium subglobosum 361139 Evosea other_Eukaryota 241 5.38e-59   NTclustered gi|831769224|ref|XM_012897186.1| 1410327 g9385 i0 82.784 9.37671232876712 273 43 93 4 4 274 564 294 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 2738 241 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
23897225 23897225 PRJNA971676_P_NODE_3919_length_405_cov_1.177711_g3830_i0 PRJNA971676 3919 405 1.177711 4.76972955 Dictyostelium discoideum 44689 Evosea other_Eukaryota 198 4.72e-46   NTclustered gi|66801350|ref|XM_629599.1| 352472 g3830 i0 83.333 25.8246913580247 216 34 53 2 186 400 215 1 Dictyostelium discoideum AX4 S60 ribosomal protein L27a (rpl27a) mRNA, complete cds blastn 10459 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
23897256 23897256 PRJNA971676_P_NODE_5679_length_353_cov_0.967857_g5590_i0 PRJNA971676 5679 353 0.967857 3.41653521 Telaepolella tubasferens 1346289 Evosea other_Eukaryota 322 2.3e-83   NTclustered gi|167859713|gb|EU273436.1| 1346289 g5590 i0 83.239 92.1274787535411 352 57 99 2 1 351 497 147 Telaepolella tubasferens clone 2 actin gene, partial cds blastn 32521 322 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Telaepolella Telaepolella tubasferens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;