RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA971593 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11147780 11147780 PRJNA971593_P_NODE_1609_length_912_cov_2.953516_g1498_i0 PRJNA971593 1609 912 2.953516 26.93606592 Brachionus rubens 392764 Rotifera other_Eukaryota 470 2.15e-127   NTclustered gi|1802791198|gb|MN256531.1| 392764 g1498 i0 82.664 31.0131578947368 548 77 59 14 14 552 11791 11253 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 28284 470 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
12423317 12423317 PRJNA971593_P_NODE_11390_length_358_cov_2.161404_g11241_i0 PRJNA971593 11390 358 2.161404 7.73782632 Brachionus rubens 392764 Rotifera other_Eukaryota 243 1.8700000000000001e-59   NTclustered gi|1802791198|gb|MN256531.1| 392764 g11241 i0 79.109 34.3184357541899 359 70 99 5 1 357 11 366 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 12286 243 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
12423663 12423663 PRJNA971593_P_NODE_970_length_1131_cov_58.889414_g878_i0 PRJNA971593 970 1131 58.889414 666.03927234 Brachionus rubens 392764 Rotifera other_Eukaryota 414 1.2799999999999996e-110   NTclustered gi|1802791198|gb|MN256531.1| 392764 g878 i0 76.982 16.1503094606543 782 145 68 30 5 769 11842 11079 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 18266 414 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
13697779 13697779 PRJNA971593_P_NODE_10071_length_382_cov_1.245955_g9922_i0 PRJNA971593 10071 382 1.245955 4.7595481 Brachionus rotundiformis 96890 Rotifera other_Eukaryota 119 3.54e-22   NTclustered gi|1066800225|gb|KX364936.1| 96890 g9922 i0 72.868 21.2879581151832 387 90 99 14 1 381 342 719 Brachionus rotundiformis chromosome I mitochondrion, complete sequence blastn 8132 119 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rotundiformis
18796179 18796179 PRJNA971593_P_NODE_455_length_1510_cov_5.814196_g391_i0 PRJNA971593 455 1510 5.814196 87.7943596 Brachionus rubens 392764 Rotifera other_Eukaryota 1005 0   NTclustered gi|632795131|gb|KJ489418.1| 392764 g391 i0 79.761 51.400662251655604 1423 258 93 23 25 1432 31 1438 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 77615 1005 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
22621269 22621269 PRJNA971593_P_NODE_14198_length_319_cov_1.565041_g14049_i0 PRJNA971593 14198 319 1.565041 4.99248079 Lepadellidae sp. SHQC150123a 1804024 Rotifera other_Eukaryota 379 1.21e-100   NTclustered gi|1009658444|gb|KU720095.1| 1804024 g14049 i0 88.328 98.5203761755486 317 35 99 2 4 319 605 290 Lepadellidae sp. SHQC150123a cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 31428 379 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae   Lepadellidae sp. SHQC150123a
25170266 25170266 PRJNA971593_P_NODE_12020_length_348_cov_2.174545_g11871_i0 PRJNA971593 12020 348 2.174545 7.5674166 Brachionus plicatilis 10195 Rotifera other_Eukaryota 200 1.11e-46   NTclustered gi|218117260|emb|AM980958.1| 10195 g11871 i0 81.377 1.31609195402299 247 44 71 2 103 348 74 319 Brachionus plicatilis partial mRNA for 40S ribosomal protein S11, (RPS11 gene) blastn 458 200 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;