RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA971593 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4772697 4772697 PRJNA971593_P_NODE_3124_length_678_cov_2.198347_g2982_i0 PRJNA971593 3124 678 2.198347 14.90479266 Chimaerohemecus trondheimensis 216968 Platyhelminthes Platyhelminthes 134 2.35e-26   NTclustered gi|29690329|gb|AY157239.1| 216968 g2982 i0 86.29 3.50589970501475 124 15 18 1 160 283 2380 2259 Chimaerohemecus trondheimensis 28S large subunit ribosomal RNA gene, partial sequence blastn 2377 134 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Aporocotylidae Chimaerohemecus Chimaerohemecus trondheimensis
15294277 15294277 PRJNA971593_P_NODE_7652_length_440_cov_1.089918_g7503_i0 PRJNA971593 7652 440 1.089918 4.7956392 Metazoa 33208 Platyhelminthes Platyhelminthes 813 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g7503 i0 100 100 440 0 100 0 1 440 53 492 Schistosoma japonicum unknown mRNA blastn 44000 813 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
21346509 21346509 PRJNA971593_P_NODE_8417_length_418_cov_3.489855_g8268_i0 PRJNA971593 8417 418 3.489855 14.5875939 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 479 1.5599999999999993e-130   NTclustered gi|68479954|gb|DQ076149.1| 6182 g8268 i0 87.53 0.997607655502392 417 49 99 3 3 418 432 18 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 417 479 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;