RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA971593 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
944330 944330 PRJNA971593_P_NODE_26781_length_244_cov_1.350877_g26632_i0 PRJNA971593 26781 244 1.350877 3.29613988 Dictyostelium discoideum 44689 Evosea other_Eukaryota 176 1.25e-39   NTclustered gi|66826022|ref|XM_641274.1| 352472 g26632 i0 82.673 6.67622950819672 202 31 82 3 7 206 1 200 Dictyostelium discoideum AX4 S60 ribosomal protein L36a (rpl36a) mRNA, complete cds blastn 1629 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
12745422 12745422 PRJNA971593_P_NODE_11310_length_359_cov_1.615385_g11161_i0 PRJNA971593 11310 359 1.615385 5.79923215 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 316 1.09e-81   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g11161 i0 83.929 90.891364902507 336 49 93 5 17 350 71 403 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 32630 316 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16247263 16247263 PRJNA971593_P_NODE_6453_length_479_cov_2.172414_g6305_i0 PRJNA971593 6453 479 2.172414 10.40586306 Acytostelium subglobosum 361139 Evosea other_Eukaryota 374 8.76e-99   NTclustered gi|831792529|ref|XM_012904619.1| 1410327 g6305 i0 81.898 68.4885177453027 453 73 94 7 1 450 565 1011 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 32806 374 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
21346328 21346328 PRJNA971593_P_NODE_21817_length_251_cov_2.073034_g21668_i0 PRJNA971593 21817 251 2.073034 5.20331534 Heterostelium album 2086695 Evosea other_Eukaryota 122 1.7099999999999998e-23   NTclustered gi|1160571044|ref|XM_020575016.1| 670386 g21668 i0 81.046 1.12749003984064 153 29 61 0 3 155 283 435 Polysphondylium pallidum PN500 40S ribosomal protein S14 (rps14), partial mRNA blastn 283 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;