RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA971593 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
944189 944189 PRJNA971593_P_NODE_18561_length_277_cov_1.132353_g18412_i0 PRJNA971593 18561 277 1.132353 3.13661781 Polychytrium aggregatum 110093 Fungi Fungi 224 5.1e-54   NTclustered gi|2432132239|ref|XM_053109464.1| 110093 g18412 i0 88.36 68.841155234657 189 18 68 4 88 274 545 359 Polychytrium aggregatum ribosomal protein S17-domain-containing protein (BJ171DRAFT_489270), mRNA blastn 19069 224 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
944393 944393 PRJNA971593_P_NODE_4961_length_544_cov_1.798301_g4815_i0 PRJNA971593 4961 544 1.798301 9.78275744 Polychytrium aggregatum 110093 Fungi Fungi 357 1.01e-93   NTclustered gi|2432150950|ref|XM_053107694.1| 110093 g4815 i0 79.878 1.39522058823529 492 95 90 3 29 518 1755 1266 Polychytrium aggregatum elongation factor EF-3 (BJ171DRAFT_424968), partial mRNA blastn 759 357 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
2219708 2219708 PRJNA971593_P_NODE_3122_length_678_cov_3.609917_g2980_i0 PRJNA971593 3122 678 3.609917 24.47523726 Polychytrium aggregatum 110093 Fungi Fungi 307 1.31e-78   NTclustered gi|2432170888|ref|XM_053112523.1| 110093 g2980 i0 77.087 33.3628318584071 563 109 82 18 44 596 49 601 Polychytrium aggregatum putative 40S ribosomal protein S3 (BJ171DRAFT_522887), mRNA blastn 22620 307 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
9872593 9872593 PRJNA971593_P_NODE_4988_length_542_cov_3.375267_g4842_i0 PRJNA971593 4988 542 3.375267 18.29394714 Polychytrium aggregatum 110093 Fungi Fungi 475 2.6699999999999993e-129   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g4842 i0 88.86 70.6236162361624 386 43 71 0 157 542 578 193 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 38278 475 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
9872623 9872623 PRJNA971593_P_NODE_7628_length_440_cov_3.147139_g7479_i0 PRJNA971593 7628 440 3.147139 13.8474116 Polychytrium aggregatum 110093 Fungi Fungi 444 6.01e-120   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g7479 i0 85.057 95.0568181818182 435 65 99 0 5 439 568 134 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 41825 444 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
11148006 11148006 PRJNA971593_P_NODE_5929_length_499_cov_6.352113_g5781_i0 PRJNA971593 5929 499 6.352113 31.69704387 Polychytrium aggregatum 110093 Fungi Fungi 401 4.199999999999999e-107   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g5781 i0 82.599 88.0220440881764 454 79 91 0 42 495 579 126 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 43923 401 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13698136 13698136 PRJNA971593_P_NODE_8871_length_408_cov_1.023881_g8722_i0 PRJNA971593 8871 408 1.023881 4.17743448 Polychytrium aggregatum 110093 Fungi Fungi 213 1.7e-50   NTclustered gi|2432129870|ref|XM_053107267.1| 110093 g8722 i0 80.645 4.47794117647059 279 50 68 4 1 277 512 236 Polychytrium aggregatum ribosomal protein S7 domain-containing protein (BJ171DRAFT_4084), mRNA blastn 1827 213 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;