RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA971593 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2219655 2219655 PRJNA971593_P_NODE_26282_length_245_cov_0.895349_g26133_i0 PRJNA971593 26282 245 0.895349 2.19360505 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 226 1.23e-54   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g26133 i0 83.265 1 245 41 100 0 1 245 3145026 3145270 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 245 226 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
6047571 6047571 PRJNA971593_P_NODE_3825_length_618_cov_1.339450_g3681_i0 PRJNA971593 3825 618 1.33945 8.277801 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 409 3.1599999999999996e-109   NTclustered gi|2874254167|emb|OY970399.1| 171953 g3681 i0 81.911 101.775080906149 492 82 79 7 112 599 2931763 2931275 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.6 genome assembly, chromosome: 1 blastn 62897 409 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18796045 18796045 PRJNA971593_P_NODE_22155_length_251_cov_0.865169_g22006_i0 PRJNA971593 22155 251 0.865169 2.17157419 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 303 5.69e-78   NTclustered gi|2874253950|emb|OY970275.1| 171953 g22006 i0 88.446 2.99601593625498 251 29 100 0 1 251 1420963 1420713 MAG: uncultured Acidobacteriota bacterium isolate MFD03399.bin.c.2 genome assembly, chromosome: 1 blastn 752 303 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18796118 18796118 PRJNA971593_P_NODE_26635_length_245_cov_0.895349_g26486_i0 PRJNA971593 26635 245 0.895349 2.19360505 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 237 5.69e-58   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g26486 i0 84.146 1.00408163265306 246 38 100 1 1 245 2206326 2206571 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 246 237 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
21346272 21346272 PRJNA971593_P_NODE_18417_length_278_cov_1.126829_g18268_i0 PRJNA971593 18417 278 1.126829 3.13258462 Granulicella tundricola 940615 Bacteria Bacteria 169 2.44e-37   NTclustered gi|321161386|gb|CP002480.1| 1198114 g18268 i0 83.708 2.56115107913669 178 29 64 0 48 225 2677900 2678077 Granulicella tundricola MP5ACTX9, complete genome blastn 712 169 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella tundricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;