RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA971593 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16247191 16247191 PRJNA971593_P_NODE_28733_length_242_cov_0.869822_g28584_i0 PRJNA971593 28733 242 0.869822 2.10496924 Thermus thermophilus 274 Bacteria Bacteria 54.7 0.006   NTclustered gi|2091883088|dbj|AP025158.1| 274 g28584 i0 100 0.239669421487603 29 0 12 0 213 241 921463 921435 Thermus thermophilus TMY DNA, complete genome blastn 58 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
16568725 16568725 PRJNA971593_P_NODE_22833_length_250_cov_0.870056_g22684_i0 PRJNA971593 22833 250 0.870056 2.17514 Thermus 270 Bacteria Bacteria 121 6.12e-23   NTclustered gi|2091883088|dbj|AP025158.1| 274 g22684 i0 86.916 40.664 107 14 43 0 102 208 1558341 1558235 Thermus thermophilus TMY DNA, complete genome blastn 10166 121 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
21668517 21668517 PRJNA971593_P_NODE_11917_length_350_cov_1.111913_g11768_i0 PRJNA971593 11917 350 1.111913 3.8916955 Bacteria 2 Bacteria Bacteria 379 1.34e-100   NTclustered gi|313151615|gb|CP002361.1| 670487 g11768 i0 91.606 132.971428571429 274 23 78 0 76 349 620036 620309 Oceanithermus profundus DSM 14977, complete genome blastn 46540 379 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Oceanithermus Oceanithermus profundus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;