RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA971593 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4772585 4772585 PRJNA971593_P_NODE_22364_length_251_cov_0.865169_g22215_i0 PRJNA971593 22364 251 0.865169 2.17157419 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 270 5.77e-68   NTclustered gi|2874254106|emb|OY970189.1| 100233 g22215 i0 86.111 4.73705179282869 252 33 100 2 1 251 6389923 6389673 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 1189 270 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
4772765 4772765 PRJNA971593_P_NODE_7304_length_450_cov_1.620690_g7155_i0 PRJNA971593 7304 450 1.62069 7.293105 Phycisphaerales bacterium 2052180 Bacteria Bacteria 226 2.4299999999999994e-54   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g7155 i0 85.981 46.5822222222222 214 26 47 4 1 212 3149431 3149642 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 20962 226 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
12745439 12745439 PRJNA971593_P_NODE_1350_length_989_cov_2.213974_g1245_i0 PRJNA971593 1350 989 2.213974 21.89620286 Pseudomonadati 3379134 Bacteria Bacteria 558 4.84e-154   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g1245 i0 80.158 51.7866531850354 761 139 76 10 227 981 465634 464880 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 51217 558 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
25492780 25492780 PRJNA971593_P_NODE_27180_length_244_cov_0.900585_g27031_i0 PRJNA971593 27180 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 58.4 4.73e-4   NTclustered gi|2874253690|emb|OY969416.1| 412056 g27031 i0 92.5 1.93852459016393 40 3 18 0 139 178 3975235 3975196 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 473 58.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;