RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA971593" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA971593 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14972337 14972337 PRJNA971593_P_NODE_4572_length_566_cov_2.336714_g4426_i0 PRJNA971593 4572 566 2.336714 13.22580124 Thecamonas trahens 529818 Root_unresolved Root_unresolved 405 3.72e-108   NTclustered gi|923124493|ref|XM_013900261.1| 461836 g4426 i0 90.554 177.743816254417 307 27 54 2 2 307 151 456 Thecamonas trahens ATCC 50062 ubiquitin C (AMSG_07946), partial mRNA blastn 100603 405 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16247117 16247117 PRJNA971593_P_NODE_23413_length_249_cov_1.312500_g23264_i0 PRJNA971593 23413 249 1.3125 3.268125 Thecamonas trahens 529818 Root_unresolved Root_unresolved 134 7.82e-27   NTclustered gi|923128656|ref|XM_013902341.1| 461836 g23264 i0 76.587 1.36144578313253 252 53 100 6 1 249 373 621 Thecamonas trahens ATCC 50062 actin-like protein 2 (AMSG_05368), mRNA blastn 339 134 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
20070960 20070960 PRJNA971593_P_NODE_2436_length_762_cov_6.223512_g2302_i0 PRJNA971593 2436 762 6.223512 47.42316144 Thecamonas trahens 529818 Root_unresolved Root_unresolved 158 1.57e-33   NTclustered gi|923132316|ref|XM_013904170.1| 461836 g2302 i0 84.375 1.66404199475066 160 25 21 0 559 718 190 31 Thecamonas trahens ATCC 50062 50S ribosomal protein L37a (AMSG_03714), partial mRNA blastn 1268 158 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;