RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA966993" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA966993 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10194373 10194373 PRJNA966993_P_NODE_67828_length_273_cov_1.925000_g67376_i0 PRJNA966993 67828 273 1.925 5.25525 root 1 Root_unresolved Root_unresolved 52.8 0.025   NTclustered gi|1496296112|gb|CP011055.2| 2287 g67376 i0 100 1.64102564102564 28 0 10 0 75 102 1727886 1727859 Saccharolobus solfataricus strain SARC-B chromosome, complete genome blastn 448 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus
12421074 12421074 PRJNA966993_P_NODE_22290_length_445_cov_1.685484_g21843_i0 PRJNA966993 22290 445 1.685484 7.5004038 Halorutilales archaeon Cl-col2-1 3242703 Archaea Archaea 54.7 0.012   NTclustered gi|2801083086|gb|CP169074.1| 3242703 g21843 i0 100 0.0651685393258427 29 0 7 0 2 30 912412 912384 Halorutilales archaeon Cl-col2-1 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halorutilales     Halorutilales archaeon Cl-col2-1
23894984 23894984 PRJNA966993_P_NODE_76439_length_260_cov_1.647059_g75987_i0 PRJNA966993 76439 260 1.647059 4.2823534 Salinibaculum marinum 3131993 Archaea Archaea 54.7 0.007   NTclustered gi|2700494403|gb|CP147838.1| 3131993 g75987 i0 100 0.111538461538462 29 0 11 0 41 69 145888 145916 Salinibaculum marinum strain SYNS191 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Salinibaculum Salinibaculum marinum
24217197 24217197 PRJNA966993_P_NODE_32039_length_376_cov_1.844884_g31587_i0 PRJNA966993 32039 376 1.844884 6.93676384 Sulfolobaceae 118883 Archaea Archaea 54.7 0.01   NTclustered gi|1780177153|gb|CP045484.1| 69656 g31587 i0 100 0.308510638297872 29 0 8 0 213 241 2755278 2755306 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome blastn 116 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera ohwakuensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;