RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA966993" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA966993 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4770463 4770463 PRJNA966993_P_NODE_37504_length_351_cov_0.823741_g37052_i0 PRJNA966993 37504 351 0.823741 2.89133091 Vannella sp. GERB 1002216 Discosea other_Eukaryota 335 2.9399999999999985e-87   NTclustered gi|327391626|gb|HM363624.1| 1002216 g37052 i0 85.196 94.9487179487179 331 44 93 5 24 351 723 1051 Vannella sp. GERB small subunit ribosomal RNA gene, partial sequence blastn 33327 335 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERB
14019334 14019334 PRJNA966993_P_NODE_12471_length_595_cov_1.647510_g12039_i0 PRJNA966993 12471 595 1.64751 9.8026845 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 628 2.1399999999999998e-175   NTclustered gi|33946348|gb|AY294153.1| 197527 g12039 i0 85.714 99.8840336134454 595 85 100 0 1 595 235 829 Platyamoeba placida actin mRNA, partial cds blastn 59431 628 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
17520083 17520083 PRJNA966993_P_NODE_30194_length_386_cov_1.718850_g29742_i0 PRJNA966993 30194 386 1.71885 6.634761 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 331 4.23e-86   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g29742 i0 82.262 9.75129533678756 389 63 100 6 1 386 2502 2887 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 3764 331 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18794448 18794448 PRJNA966993_P_NODE_97995_length_242_cov_0.911243_g97543_i0 PRJNA966993 97995 242 0.911243 2.20520806 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 185 2.06e-42   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g97543 i0 82.464 34.9917355371901 211 37 87 0 4 214 223 13 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 8468 185 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20069299 20069299 PRJNA966993_P_NODE_91696_length_245_cov_4.395349_g91244_i0 PRJNA966993 91696 245 4.395349 10.76860505 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 287 5.57e-73   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g91244 i0 87.755 33.9510204081633 245 30 100 0 1 245 5482 5238 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 8318 287 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25168069 25168069 PRJNA966993_P_NODE_16920_length_508_cov_6.383908_g16478_i0 PRJNA966993 16920 508 6.383908 32.43025264 Vannella sp. 1973054 Discosea other_Eukaryota 859 0   NTclustered gi|2169663314|gb|OL989990.1| 1973054 g16478 i0 97.59 87.1574803149606 498 12 98 0 1 498 1369 1866 Vannella sp. isolate P147 small subunit ribosomal RNA gene, partial sequence blastn 44276 859 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
25492007 25492007 PRJNA966993_P_NODE_16680_length_512_cov_3.892938_g16238_i0 PRJNA966993 16680 512 3.892938 19.93184256 Vannellidae 95227 Discosea other_Eukaryota 784 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g16238 i0 94.358 100.75 514 24 100 5 1 512 1172 1682 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 51584 785 0.998726114649682 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;