RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA966993" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA966993 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17519998 17519998 PRJNA966993_P_NODE_19974_length_469_cov_3.396465_g19529_i0 PRJNA966993 19974 469 3.396465 15.92942085 Polychytrium aggregatum 110093 Fungi Fungi 54.7 0.013   NTclustered gi|2432144566|ref|XM_053115345.1| 110093 g19529 i0 100 0.0618336886993603 29 0 6 0 375 403 553 581 Polychytrium aggregatum ran-specific GTPase-activating protein (BJ171DRAFT_616054), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
17520145 17520145 PRJNA966993_P_NODE_37134_length_352_cov_1.655914_g36682_i0 PRJNA966993 37134 352 1.655914 5.82881728 Polychytrium aggregatum 110093 Fungi Fungi 174 6.81e-39   NTclustered gi|2432142218|ref|XM_053114797.1| 110093 g36682 i0 80 59.2755681818182 245 42 69 5 39 281 262 501 Polychytrium aggregatum ribosomal protein S13/S18-domain-containing protein (BJ171DRAFT_597985), partial mRNA blastn 20865 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;