RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA966993" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA966993 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11145604 11145604 PRJNA966993_P_NODE_18769_length_483_cov_2.982927_g18324_i0 PRJNA966993 18769 483 2.982927 14.40753741 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 274 9.229999999999999e-69   NTclustered gi|2893358426|emb|OZ220718.1| 2910147 g18324 i0 78.07 8.85714285714286 456 84 93 14 4 451 1182759 1182312 MAG: Vicinamibacterales bacterium isolate 0ce2d42f-2bf0-44bc-a671-070680eb922c genome assembly, chromosome: 1 blastn 4278 274 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
13695729 13695729 PRJNA966993_P_NODE_33331_length_370_cov_1.134680_g32879_i0 PRJNA966993 33331 370 1.13468 4.198316 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 54.7 0.01   NTclustered gi|2874253700|emb|OY969426.1| 2651171 g32879 i0 96.97 0.0891891891891892 33 0 9 1 40 71 2647989 2648021 MAG: Thermoanaerobaculia bacterium isolate MFD02979.bin.c.1 genome assembly, chromosome: 1 blastn 33 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
14969972 14969972 PRJNA966993_P_NODE_29492_length_390_cov_2.347003_g29040_i0 PRJNA966993 29492 390 2.347003 9.1533117 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 52.8 0.037   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g29040 i0 100 0.0717948717948718 28 0 7 0 27 54 2427641 2427614 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
14970456 14970456 PRJNA966993_P_NODE_84172_length_250_cov_0.870056_g83720_i0 PRJNA966993 84172 250 0.870056 2.17514 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 259 1.24e-64   NTclustered gi|2874253862|emb|OY969918.1| 171953 g83720 i0 85.542 3.256 249 34 99 2 3 250 687734 687981 MAG: uncultured Acidobacteriota bacterium isolate MFD04967.bin.c.4 genome assembly, chromosome: 1 blastn 814 259 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;