RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA966993" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA966993 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
942383 942383 PRJNA966993_P_NODE_73961_length_264_cov_1.612565_g73509_i0 PRJNA966993 73961 264 1.612565 4.2571716 Leptotrichia rugosa 3239302 Bacteria Bacteria 488 1.5499999999999999e-133   NTclustered gi|2785246835|gb|CP165644.1| 3239302 g73509 i0 100 156.291666666667 264 0 100 0 1 264 1645969 1645706 Leptotrichia sp. HSP-334 chromosome, complete genome blastn 41261 488 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia rugosa
8595334 8595334 PRJNA966993_P_NODE_60767_length_284_cov_1.047393_g60315_i0 PRJNA966993 60767 284 1.047393 2.97459612 Leptotrichia wadei 157687 Bacteria Bacteria 503 6.02e-138   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g60315 i0 98.596 436.707746478873 285 3 100 1 1 284 2247212 2247496 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 124025 503 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
16245239 16245239 PRJNA966993_P_NODE_71313_length_268_cov_1.579487_g70861_i0 PRJNA966993 71313 268 1.579487 4.23302516 Haliovirga abyssi 2996794 Bacteria Bacteria 58.4 5.27e-4   NTclustered gi|2502752323|dbj|AP027059.1| 2996794 g70861 i0 92.857 0.156716417910448 42 0 15 3 183 222 2414460 2414500 Fusobacteria bacterium IC12 DNA, complete genome blastn 42 58.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Haliovirgaceae Haliovirga Haliovirga abyssi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;