RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA966993" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA966993 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4770904 4770904 PRJNA966993_P_NODE_89444_length_247_cov_0.885057_g88992_i0 PRJNA966993 89444 247 0.885057 2.18609079 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.022   NTclustered gi|2319599143|ref|XM_001319534.2| 412133 g88992 i0 100 0.11336032388664 28 0 11 0 133 160 2416 2389 Trichomonas vaginalis G3 A-type inclusion protein-like (TVAGG3_0609930), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
6045359 6045359 PRJNA966993_P_NODE_39885_length_341_cov_0.932836_g39433_i0 PRJNA966993 39885 341 0.932836 3.18097076 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 261 4.92e-65   NTclustered gi|2806470097|ref|XM_068493638.1| 1144522 g39433 i0 83.513 41.9530791788856 279 46 82 0 1 279 285 7 Tritrichomonas foetus Tubulin beta chain (TRFO_07368), partial mRNA blastn 14306 261 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
9870763 9870763 PRJNA966993_P_NODE_90388_length_246_cov_1.757225_g89936_i0 PRJNA966993 90388 246 1.757225 4.3227735 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 52.8 0.022   NTclustered gi|2794964833|ref|XM_067863305.1| 2049356 g89936 i0 100 0.113821138211382 28 0 11 0 41 68 2612 2585 Monocercomonoides exilis uncharacterized protein (MONOS_10827), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
17520087 17520087 PRJNA966993_P_NODE_30714_length_383_cov_1.809677_g30262_i0 PRJNA966993 30714 383 1.809677 6.93106291 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.01   NTclustered gi|123356797|ref|XM_001295652.1| 412133 g30262 i0 96.875 0.0835509138381201 32 1 8 0 210 241 162 131 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0616710), partial mRNA blastn 32 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
25168700 25168700 PRJNA966993_P_NODE_85140_length_249_cov_2.528409_g84688_i0 PRJNA966993 85140 249 2.528409 6.29573841 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 69.4 2.24e-7   NTclustered gi|2806468325|ref|XM_068507147.1| 1144522 g84688 i0 82.278 0.469879518072289 79 14 32 0 167 245 122 44 Tritrichomonas foetus uncharacterized protein (TRFO_30081), partial mRNA blastn 117 69.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;