RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA964500" and tax_kingdom = "Heunggongvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Heunggongvirae · 5 ✖

bioproject 1

  • PRJNA964500 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
941836 941836 PRJNA964500_S_NODE_821_length_473_cov_5.592342_g737_i0 PRJNA964500 821 473 5.592342 26.45177766 Caudoviricetes sp. 2832643 Viruses Viruses 627 6.01e-175   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g737 i0 92.342 377.012684989429 444 29 93 5 1 442 18323 17883 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 178327 627 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
12420967 12420967 PRJNA964500_S_NODE_8630_length_198_cov_36.213018_g8538_i0 PRJNA964500 8630 198 36.213018 71.70177564 CrAssphage cat_SB2894 2781373 Viruses Viruses 62.1 2.85e-5   NTclustered gi|1933200211|gb|MW063138.1| 2781373 g8538 i0 100 5.53030303030303 33 0 17 0 1 33 33566 33598 MAG: CrAssphage cat_SB2894, partial genome blastn 1095 62.1 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Crassvirales Intestiviridae Carjivirus CrAssphage cat_SB2894
15293444 15293444 PRJNA964500_S_NODE_2852_length_307_cov_2.809353_g2760_i0 PRJNA964500 2852 307 2.809353 8.62471371 root 1 Root_unresolved Root_unresolved 568 2.3e-157   NTclustered gi|2583941926|gb|OP431890.1| 10298 g2760 i0 100 100 307 0 100 0 1 307 50956 50650 Human alphaherpesvirus 1 strain HSV1-v63_d84_oral, partial genome blastn 30700 568 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
20391789 20391789 PRJNA964500_S_NODE_1836_length_357_cov_30250.756098_g1744_i0 PRJNA964500 1836 357 30250.756098 107995.19926986 root 1 Root_unresolved Root_unresolved 457 6.1299999999999984e-124   NTclustered gi|2583942922|gb|OP431909.1| 10298 g1744 i0 100 134.294117647059 247 0 69 0 57 303 130534 130780 Human alphaherpesvirus 1 strain HSV1-v62_d3_gen_les, partial genome blastn 47943 457 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
22943248 22943248 PRJNA964500_S_NODE_9518_length_191_cov_2.925926_g9426_i0 PRJNA964500 9518 191 2.925926 5.58851866 Viruses 10239 Viruses Viruses 54.7 0.005   NTclustered gi|1774769601|gb|MN158206.1| 2656629 g9426 i0 100 0.303664921465969 29 0 15 0 1 29 42039 42011 Escherichia phage BEK2, complete genome blastn 58 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Drexlerviridae   Escherichia phage BEK2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;