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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA964500" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA964500 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
941781 941781 PRJNA964500_S_NODE_17521_length_150_cov_3.322314_g17429_i0 PRJNA964500 17521 150 3.322314 4.983471 Stichococcus bacillaris 37433 Plants Plants 278 1.85e-70   NTclustered gi|371782093|emb|HE610125.1| 37433 g17429 i0 100 23.8533333333333 150 0 100 0 1 150 6996 7145 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 3578 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
2217119 2217119 PRJNA964500_S_NODE_5082_length_245_cov_295.166667_g4990_i0 PRJNA964500 5082 245 295.166667 723.15833415 Koliella longiseta 33092 Plants Plants 291 4.3000000000000005e-74   NTclustered gi|371782094|emb|HE610126.1| 33092 g4990 i0 91.163 89.2204081632653 215 18 88 1 31 245 4953 4740 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 21859 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
3817497 3817497 PRJNA964500_S_NODE_5243_length_242_cov_307.183099_g5151_i0 PRJNA964500 5243 242 307.183099 743.38309958 Trebouxia 13786 Plants Plants 340 4.15e-89   NTclustered gi|1273623725|gb|KY033354.1| 285713 g5151 i0 95.755 88.702479338843 212 8 88 1 1 212 6606 6816 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 21466 340 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
3817520 3817520 PRJNA964500_S_NODE_843_length_468_cov_71.708428_g759_i0 PRJNA964500 843 468 71.708428 335.59544304 Trebouxia 13786 Plants Plants 752 0   NTclustered gi|1273623725|gb|KY033354.1| 285713 g759 i0 98.588 91.2222222222222 425 6 91 0 19 443 6129 6553 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 42692 752 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
7643499 7643499 PRJNA964500_S_NODE_4246_length_263_cov_41151.829060_g4154_i0 PRJNA964500 4246 263 41151.82906 108229.3104278 Chlorophyta 3041 Plants Plants 326 1.2799999999999999e-84   NTclustered gi|2084944110|gb|MZ882158.1| 3076 g4154 i0 97.872 73.7414448669201 188 4 71 0 24 211 1377 1564 Chlorella sorokiniana strain 2B3 small subunit ribosomal RNA gene, partial sequence blastn 19394 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
8594812 8594812 PRJNA964500_S_NODE_3367_length_287_cov_288.996124_g3275_i0 PRJNA964500 3367 287 288.996124 829.41887588 Chlorella vulgaris 3077 Plants Plants 339 1.82e-88   NTclustered gi|77627727|dbj|AB237642.1| 3077 g3275 i0 92.149 77.2334494773519 242 15 84 4 34 273 1838 2077 Chlorella vulgaris NIES:227 gene for 28S ribosomal RNA, partial sequence blastn 22166 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
8918316 8918316 PRJNA964500_S_NODE_17467_length_150_cov_6.107438_g17375_i0 PRJNA964500 17467 150 6.107438 9.161157 Sphaeropleales 35491 Plants Plants 231 1.4599999999999998e-56   NTclustered gi|6120022|gb|AF183482.1| 3088 g17375 i0 95.833 95.9733333333333 144 5 95 1 4 146 1469 1612 Tetradesmus obliquus culture SAG:276-3a strain SAG 276-3a 28S ribosomal RNA gene, partial sequence blastn 14396 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
9870008 9870008 PRJNA964500_S_NODE_4728_length_253_cov_284.040179_g4636_i0 PRJNA964500 4728 253 284.040179 718.62165287 Scherffelia dubia 3190 Plants Plants 182 2.81e-41   NTclustered gi|371782096|emb|HE610128.1| 3190 g4636 i0 82.143 101.470355731225 224 29 88 9 31 253 2816 2603 Scherffelia dubia 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 17.86 blastn 25672 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
12420945 12420945 PRJNA964500_S_NODE_4990_length_247_cov_293.463303_g4898_i0 PRJNA964500 4990 247 293.463303 724.85435841 Stichococcus bacillaris 37433 Plants Plants 350 7.07e-92   NTclustered gi|371782093|emb|HE610125.1| 37433 g4898 i0 95.853 89.5748987854251 217 8 88 1 1 217 4751 4966 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 22125 350 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
22618890 22618890 PRJNA964500_S_NODE_10358_length_184_cov_19.129032_g10266_i0 PRJNA964500 10358 184 19.129032 35.19741888 Wislouchiella sp. UTEX 'LB 1030' 52032 Plants Plants 71.3 4.33e-8   NTclustered gi|15281675|gb|AF395515.1| 52032 g10266 i0 97.561 203.173913043478 41 1 22 0 26 66 1785 1745 Wislouchiella sp. UTEX 'LB 1030' strain UTEX LB 1030 26S ribosomal RNA gene, partial sequence blastn 37384 71.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Phacotaceae Wislouchiella Wislouchiella sp. UTEX 'LB 1030'
22943242 22943242 PRJNA964500_S_NODE_918_length_454_cov_71.185882_g830_i0 PRJNA964500 918 454 71.185882 323.18390428 Trebouxia 13786 Plants Plants 695 0   NTclustered gi|1273623725|gb|KY033354.1| 285713 g830 i0 95.423 96.5440528634361 437 19 96 1 19 454 6129 6565 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 43831 695 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;