RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA964500" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA964500 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3492476 3492476 PRJNA964500_S_NODE_12723_length_170_cov_3.510638_g12631_i0 PRJNA964500 12723 170 3.510638 5.9680846 Isosphaeraceae bacterium EP7 3139350 Bacteria Bacteria 254 3.63e-63   NTclustered gi|2719878338|gb|CP151667.1| 3139350 g12631 i0 95.031 43.1176470588235 161 8 95 0 1 161 1599526 1599686 Isosphaeraceae bacterium EP7 chromosome, complete genome blastn 7330 254 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium EP7
13695439 13695439 PRJNA964500_S_NODE_10851_length_181_cov_2.776316_g10759_i0 PRJNA964500 10851 181 2.776316 5.02513196 planctomycete str. 139 149588 Bacteria Bacteria 270 3.899999999999999e-68   NTclustered gi|12583967|gb|AF245371.1|AF245371 149588 g10759 i0 93.855 133.303867403315 179 11 99 0 3 181 1575 1753 Planctomycete str. 139 23S ribosomal RNA gene, partial sequence blastn 24128 270 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 139
14969813 14969813 PRJNA964500_S_NODE_9272_length_193_cov_2.128049_g9180_i0 PRJNA964500 9272 193 2.128049 4.10713457 Prosthecobacter fusiformis 48464 Bacteria Bacteria 340 3.17e-89   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g9180 i0 98.446 266.284974093264 193 3 100 0 1 193 496 688 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 51393 340 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;