RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA964500" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA964500 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3817479 3817479 PRJNA964500_S_NODE_2703_length_312_cov_12.409894_g2611_i0 PRJNA964500 2703 312 12.409894 38.71886928 Tritrichomonas 5723 Parabasalia other_Eukaryota 551 2.359999999999999e-152   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g2611 i0 100 94.6891025641026 298 0 96 0 4 301 451 748 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 29543 551 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
5093825 5093825 PRJNA964500_S_NODE_724_length_490_cov_20511.002169_g645_i0 PRJNA964500 724 490 20511.002169 100503.9106281 Tritrichomonas 5723 Parabasalia other_Eukaryota 789 0   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g645 i0 99.539 89.2979591836735 434 1 89 1 1 434 456 24 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 43756 789 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
11469350 11469350 PRJNA964500_S_NODE_649_length_507_cov_14053.755230_g574_i0 PRJNA964500 649 507 14053.75523 71252.5390161 Tritrichomonas 5723 Parabasalia other_Eukaryota 830 0   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g574 i0 99.346 91.2623274161736 459 2 90 1 1 458 877 1335 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 46270 835 0.994011976047904 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
16244644 16244644 PRJNA964500_S_NODE_133_length_832_cov_10.323786_g109_i0 PRJNA964500 133 832 10.323786 85.89389952 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 1303 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g109 i0 94.964 18.8149038461538 834 37 100 4 1 832 912 1742 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 15654 1303 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
23894320 23894320 PRJNA964500_S_NODE_1499_length_382_cov_9.271955_g1407_i0 PRJNA964500 1499 382 9.271955 35.4188681 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 645 1.3099999999999995e-180   NTclustered gi|2274983416|gb|OP038912.1| 5725 g1407 i0 97.368 25.7198952879581 380 9 99 1 1 380 939 561 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 9825 645 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
25167987 25167987 PRJNA964500_S_NODE_580_length_525_cov_23.437500_g509_i0 PRJNA964500 580 525 23.4375 123.046875 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 701 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g509 i0 91.618 28.0190476190476 513 34 97 9 11 517 50 559 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 14710 701 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;