RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951810 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2213388 2213388 PRJNA951810_P_NODE_86702_length_298_cov_5.146667_g86358_i0 PRJNA951810 86702 298 5.146667 15.33706766 Pyramidobacter sp. YE332 3068894 Bacteria Bacteria 119 2.69e-22   NTclustered gi|2601021520|gb|CP133038.1| 3068894 g86358 i0 77.311 8.48657718120805 238 31 74 14 43 262 2723964 2724196 Pyramidobacter sp. YE332 chromosome, complete genome blastn 2529 119 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. YE332
12416617 12416617 PRJNA951810_P_NODE_50150_length_310_cov_5.518987_g49807_i0 PRJNA951810 50150 310 5.518987 17.1088597 Fretibacterium fastidiosum 651822 Bacteria Bacteria 255 2.06e-63   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g49807 i0 97.333 1.93548387096774 150 4 97 0 161 310 1361589 1361440 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 600 255 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
21666140 21666140 PRJNA951810_P_NODE_41077_length_310_cov_11.337553_g40734_i0 PRJNA951810 41077 310 11.337553 35.146414300000004 Aminithiophilus 3029078 Bacteria Bacteria 87.9 7.94e-13   NTclustered gi|2041259188|gb|CP074691.1| 2268202 g40734 i0 88.732 0.458064516129032 71 8 23 0 163 233 1947305 1947235 Synergistota bacterium strain L-13 chromosome, complete genome blastn 142 87.9 1 Bacteria   Thermotogati Synergistota         Synergistota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;