RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951810 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1263977 1263977 PRJNA951810_P_NODE_66081_length_310_cov_2.696203_g65738_i0 PRJNA951810 66081 310 2.696203 8.3582293 Rhodothermales 1853224 Bacteria Bacteria 67.6 1.03e-6   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g65738 i0 90.385 0.774193548387097 52 3 16 2 15 65 2659546 2659596 Rhodothermaceae bacterium RA chromosome, complete genome blastn 240 67.6 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
2213181 2213181 PRJNA951810_P_NODE_74962_length_299_cov_7.022124_g74618_i0 PRJNA951810 74962 299 7.022124 20.99615076 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 119 2.7e-22   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g74618 i0 81.208 1.1438127090301 149 26 49 2 149 296 833868 834015 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 342 119 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
14963393 14963393 PRJNA951810_P_NODE_114352_length_284_cov_1.706161_g114008_i0 PRJNA951810 114352 284 1.706161 4.84549724 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 283 8.539999999999999e-72   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g114008 i0 86.822 394.334507042254 258 29 90 5 29 284 1309135 1309389 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 111991 283 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
17841304 17841304 PRJNA951810_P_NODE_39074_length_312_cov_5.154812_g38731_i0 PRJNA951810 39074 312 5.154812 16.08301344 root 1 Root_unresolved Root_unresolved 78.7 4.81e-10   NTclustered gi|1419235469|gb|CP030716.1| 146919 g38731 i0 91.379 2.55448717948718 58 3 18 2 93 149 2970630 2970686 Salinibacter ruber strain P13 chromosome, complete genome blastn 797 78.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
20064285 20064285 PRJNA951810_P_NODE_52316_length_310_cov_4.987342_g51973_i0 PRJNA951810 52316 310 4.987342 15.4607602 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 54.7 0.008   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g51973 i0 96.875 0.203225806451613 32 1 10 0 22 53 1770641 1770672 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 63 54.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;