RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951810 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2210714 2210714 PRJNA951810_P_NODE_105422_length_289_cov_9.731481_g105078_i0 PRJNA951810 105422 289 9.731481 28.12398009 Patiria miniata 46514 Echinodermata other_Eukaryota 67.6 9.55e-7   NTclustered gi|1944934410|ref|XM_038222831.1| 46514 g105078 i0 97.436 2.30103806228374 39 1 13 0 12 50 691 729 PREDICTED: Patiria miniata serine-aspartate repeat-containing protein F-like (LOC119746059), transcript variant X2, mRNA blastn 665 67.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
14964236 14964236 PRJNA951810_P_NODE_16452_length_481_cov_6.107843_g16119_i0 PRJNA951810 16452 481 6.107843 29.37872483 Lytechinus pictus 7653 Echinodermata other_Eukaryota 54.7 0.013   NTclustered gi|2707400646|ref|XM_064113069.1| 7653 g16119 i0 100 0.361746361746362 29 0 6 0 383 411 6246 6274 PREDICTED: Lytechinus pictus zinc finger MIZ domain-containing protein 1-like (LOC129281907), transcript variant X3, mRNA blastn 174 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;