RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA951810 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2212490 2212490 PRJNA951810_P_NODE_33462_length_344_cov_1.564576_g33120_i0 PRJNA951810 33462 344 1.564576 5.38214144 Platyamoeba placida 3454475 Discosea other_Eukaryota 453 7.630000000000001e-123   NTclustered gi|33946348|gb|AY294153.1| 197527 g33120 i0 90.407 98.3982558139535 344 33 100 0 1 344 758 1101 Platyamoeba placida actin mRNA, partial cds blastn 33849 453 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
4766581 4766581 PRJNA951810_P_NODE_93264_length_296_cov_4.197309_g92920_i0 PRJNA951810 93264 296 4.197309 12.42403464 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 60.2 1.64e-4   NTclustered gi|470484210|ref|XM_004343996.1| 1257118 g92920 i0 91.111 0.152027027027027 45 2 15 2 229 272 446 403 Acanthamoeba castellanii str. Neff Peroxin 13 (Pex13), putative (ACA1_053870), partial mRNA blastn 45 60.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7315775 7315775 PRJNA951810_P_NODE_65506_length_310_cov_2.780591_g65163_i0 PRJNA951810 65506 310 2.780591 8.6198321 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 145 4.6399999999999994e-30   NTclustered gi|470531839|ref|XM_004358199.1| 1257118 g65163 i0 84.828 0.670967741935484 145 20 46 2 1 144 435 292 Acanthamoeba castellanii str. Neff thiF family protein (ACA1_085210), partial mRNA blastn 208 145 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11139539 11139539 PRJNA951810_P_NODE_134589_length_269_cov_10.183673_g134244_i0 PRJNA951810 134589 269 10.183673 27.39408037 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 228 3.809999999999999e-55   NTclustered gi|470427085|ref|XM_004337911.1| 1257118 g134244 i0 98.45 0.479553903345725 129 2 48 0 128 256 1539 1411 Acanthamoeba castellanii str. Neff 4aminobutyrate aminotransferase (ACA1_321730), partial mRNA blastn 129 228 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11467551 11467551 PRJNA951810_P_NODE_34569_length_337_cov_5.189394_g34226_i0 PRJNA951810 34569 337 5.189394 17.48825778 Ripella 1217112 Discosea other_Eukaryota 520 7.249999999999999e-143   NTclustered gi|1269228350|gb|MF683475.1| 2047821 g34226 i0 94.444 91.7329376854599 342 11 100 6 1 337 182 520 Ripella platypodia clone 23.4.23 18S ribosomal RNA gene, partial sequence blastn 30914 520 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
19115634 19115634 PRJNA951810_P_NODE_90535_length_297_cov_4.343750_g90191_i0 PRJNA951810 90535 297 4.34375 12.9009375 Acanthamoeba 5754 Discosea other_Eukaryota 135 2.6600000000000003e-27   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g90191 i0 78.112 2.96969696969697 233 37 74 6 7 226 836 605 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 882 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21338739 21338739 PRJNA951810_P_NODE_180737_length_231_cov_4.031646_g180392_i0 PRJNA951810 180737 231 4.031646 9.31310226 Ripella tribonemae 2047823 Discosea other_Eukaryota 390 3.849999999999999e-104   NTclustered gi|1269228471|gb|MF683596.1| 2047823 g180392 i0 96.996 101.155844155844 233 5 100 2 1 231 1549 1317 Ripella tribonemae clone 22.1.14 18S ribosomal RNA gene, partial sequence blastn 23367 390 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;