RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951810 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4764281 4764281 PRJNA951810_P_NODE_135804_length_269_cov_1.505102_g135459_i0 PRJNA951810 135804 269 1.505102 4.04872438 Fimicolochytrium jonesii 1396493 Fungi Fungi 207 4.97e-49   NTclustered gi|2432111638|ref|XM_053071593.1| 1396493 g135459 i0 80.597 18.7881040892193 268 52 99 0 1 268 417 684 Fimicolochytrium jonesii 40S ribosomal protein S2 (EV422DRAFT_547289), mRNA blastn 5054 207 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
11139883 11139883 PRJNA951810_P_NODE_155209_length_254_cov_1.254144_g154864_i0 PRJNA951810 155209 254 1.254144 3.18552576 Fimicolochytrium jonesii 1396493 Fungi Fungi 89.8 1.76e-13   NTclustered gi|2432078701|ref|XM_053072586.1| 1396493 g154864 i0 80.672 0.468503937007874 119 19 46 3 1 117 420 536 Fimicolochytrium jonesii ribosomal protein L6, alpha-beta domain-containing protein (EV422DRAFT_567871), partial mRNA blastn 119 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
23887672 23887672 PRJNA951810_P_NODE_100179_length_292_cov_14.255708_g99835_i0 PRJNA951810 100179 292 14.255708 41.62666736 Spizellomyces punctatus 109760 Fungi Fungi 255 1.92e-63   NTclustered gi|1027002514|ref|XM_016754407.1| 645134 g99835 i0 83.696 158.462328767123 276 40 94 4 18 292 357 86 Spizellomyces punctatus DAOM BR117 ubiquitin-40S ribosomal protein S27a (SPPG_06203), partial mRNA blastn 46271 255 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;