RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951810 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
938198 938198 PRJNA951810_P_NODE_93241_length_296_cov_4.224215_g92897_i0 PRJNA951810 93241 296 4.224215 12.5036764 Chlorobaculum sp. MV4-Y 2976335 Bacteria Bacteria 230 1.1799999999999998e-55   NTclustered gi|2304448134|gb|CP104202.1| 2976335 g92897 i0 82.772 72.7972972972973 267 36 89 7 10 271 1249415 1249154 Chlorobaculum sp. MV4-Y chromosome, complete genome blastn 21548 230 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp. MV4-Y
7315223 7315223 PRJNA951810_P_NODE_32086_length_352_cov_9.297491_g31744_i0 PRJNA951810 32086 352 9.297491 32.72716832 Chlorobaculum limnaeum 274537 Bacteria Bacteria 102 3.26e-17   NTclustered gi|1070918267|gb|CP017305.1| 274537 g31744 i0 80.292 1.05681818181818 137 25 39 2 217 352 2212792 2212657 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome blastn 372 102 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum limnaeum
16240097 16240097 PRJNA951810_P_NODE_37053_length_322_cov_5.759036_g36710_i0 PRJNA951810 37053 322 5.759036 18.54409592 Pelodictyon phaeoclathratiforme 34090 Bacteria Bacteria 62.1 5.02e-5   NTclustered gi|194307659|gb|CP001110.1| 324925 g36710 i0 95 16.2701863354037 40 1 12 1 168 207 2509938 2509900 Pelodictyon phaeoclathratiforme BU-1 chromosome, complete genome blastn 5239 62.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;