RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA951810 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4766643 4766643 PRJNA951810_P_NODE_97064_length_294_cov_4.828054_g96720_i0 PRJNA951810 97064 294 4.828054 14.19447876 Lithodesmium undulatum 59812 SAR_Eukaryotes SAR_Eukaryotes 202 2.56e-47   NTclustered gi|2088237800|ref|NC_056903.1| 59812 g96720 i0 83.482 73.8367346938775 224 29 74 5 17 233 2717 2939 Lithodesmium undulatum mitochondrion, complete genome blastn 21708 202 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Lithodesmium Lithodesmium undulatum
23889371 23889371 PRJNA951810_P_NODE_20719_length_440_cov_2.678474_g20381_i0 PRJNA951810 20719 440 2.678474 11.7852856 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 281 4.98e-71   NTclustered gi|657012367|gb|KF302531.1| 2850 g20381 i0 83.121 31.4454545454545 314 47 71 6 1 311 326 16 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 13836 281 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;