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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA951810" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA951810 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3486024 3486024 PRJNA951810_P_NODE_101583_length_292_cov_3.073059_g101239_i0 PRJNA951810 101583 292 3.073059 8.97333228 Volvox carteri 3067 Plants Plants 87.9 7.42e-13   NTclustered gi|302853986|ref|XM_002958459.1| 3068 g101239 i0 85.882 36.2876712328767 85 9 29 3 170 253 1048 966 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_108163), mRNA blastn 10596 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
3486936 3486936 PRJNA951810_P_NODE_156723_length_252_cov_6.016760_g156378_i0 PRJNA951810 156723 252 6.01676 15.1622352 Paradoxia multiseta 249350 Plants Plants 409 1.18e-109   NTclustered gi|723457039|ref|NC_025540.1| 249350 g156378 i0 96.032 2.65873015873016 252 8 99 2 1 251 87316 87566 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 670 409 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
7640967 7640967 PRJNA951810_P_NODE_117426_length_282_cov_1.377990_g117082_i0 PRJNA951810 117426 282 1.37799 3.8859318 Ulva 3118 Plants Plants 52.8 0.026   NTclustered gi|2589364038|ref|NC_077591.1| 434723 g117082 i0 100 0.198581560283688 28 0 10 0 88 115 34563 34590 Ulva meridionalis isolate LF010 chloroplast, complete genome blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva meridionalis
9866198 9866198 PRJNA951810_P_NODE_86828_length_298_cov_5.000000_g86484_i0 PRJNA951810 86828 298 5 14.9 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082257428|ref|XM_043067003.1| 3055 g86484 i0 100 0.100671140939597 30 0 10 0 205 234 1431 1460 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g453400v5), mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
11140340 11140340 PRJNA951810_P_NODE_181809_length_230_cov_2.834395_g181464_i0 PRJNA951810 181809 230 2.834395 6.5191085 Asterochloris sp. DA2 909298 Plants Plants 176 1.17e-39   NTclustered gi|310877182|gb|HM355458.1| 909298 g181464 i0 80.952 85.3521739130435 231 36 99 8 1 227 411 185 Asterochloris sp. DA2 clone SLJClgrII_0233_ef1a hypothetical protein mRNA, partial cds blastn 19631 176 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Asterochloris Asterochloris sp. DA2
16239097 16239097 PRJNA951810_P_NODE_158393_length_251_cov_3.044944_g158048_i0 PRJNA951810 158393 251 3.044944 7.64280944 Pleurastrosarcina brevispinosa 163096 Plants Plants 259 1.25e-64   NTclustered gi|698349064|gb|KM462875.1| 163096 g158048 i0 97.987 0.593625498007968 149 3 59 0 103 251 234713 234861 Chlorosarcina brevispinosa culture-collection UTEX:1176 chloroplast, partial genome blastn 149 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Pleurastrosarcina Pleurastrosarcina brevispinosa
16239317 16239317 PRJNA951810_P_NODE_171833_length_241_cov_1.738095_g171488_i0 PRJNA951810 171833 241 1.738095 4.18880895 Monoraphidium neglectum 145388 Plants Plants 60.2 1.3e-4   NTclustered gi|926785291|ref|XM_014045666.1| 145388 g171488 i0 97.222 15.8257261410788 36 0 15 1 4 39 478 444 Monoraphidium neglectum Asparagine synthetase domain-containing protein 1 mRNA blastn 3814 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
16240369 16240369 PRJNA951810_P_NODE_53293_length_310_cov_4.776371_g52950_i0 PRJNA951810 53293 310 4.776371 14.8067501 Coccomyxa subellipsoidea 248742 Plants Plants 87.9 7.94e-13   NTclustered gi|545364112|ref|XM_005647064.1| 574566 g52950 i0 89.706 0.419354838709677 68 7 22 0 80 147 2177 2244 Coccomyxa subellipsoidea C-169 ubiquitin-activating enzyme E1 mRNA blastn 130 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
25161830 25161830 PRJNA951810_P_NODE_124720_length_277_cov_1.318627_g124375_i0 PRJNA951810 124720 277 1.318627 3.65259679 Chlorella variabilis 554065 Plants Plants 52.8 0.025   NTclustered gi|552833079|ref|XM_005848416.1| 554065 g124375 i0 96.774 0.111913357400722 31 1 11 0 60 90 2179 2149 Chlorella variabilis hypothetical protein (CHLNCDRAFT_144896) mRNA, complete cds blastn 31 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
25162823 25162823 PRJNA951810_P_NODE_186140_length_224_cov_4.523179_g185795_i0 PRJNA951810 186140 224 4.523179 10.13192096 Volvox carteri 3067 Plants Plants 58.4 4.28e-4   NTclustered gi|302834113|ref|XM_002948574.1| 3068 g185795 i0 100 0.669642857142857 31 0 14 0 190 220 4152 4122 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_103955), partial mRNA blastn 150 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;