RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951412 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8587803 8587803 PRJNA951412_P_NODE_607_length_597_cov_2.843511_g522_i0 PRJNA951412 607 597 2.843511 16.97576067 Pristionchus americanus 376549 Nematoda Nematoda 224 1.18e-53   NTclustered gi|150982255|gb|EF634716.1| 376549 g522 i0 81.522 36.2680067001675 276 47 46 4 51 324 30 303 Pristionchus americanus large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 21652 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus americanus
11138490 11138490 PRJNA951412_P_NODE_649_length_569_cov_2.715726_g564_i0 PRJNA951412 649 569 2.715726 15.45248094 Pristionchus sp. 14 RS5230 452808 Nematoda Nematoda 298 6.53e-76   NTclustered gi|150981879|gb|EF634509.1| 452808 g564 i0 78.105 75.8892794376098 475 100 83 4 93 565 53 525 Pristionchus sp. 14 RS5230 large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 43181 298 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 14 RS5230

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;