RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951412 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9862811 9862811 PRJNA951412_P_NODE_4168_length_252_cov_1.743017_g4083_i0 PRJNA951412 4168 252 1.743017 4.39240284 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 257 4.510000000000001e-64   NTclustered gi|2814788337|emb|OY760908.2| 2026734 g4083 i0 86.008 213.813492063492 243 31 96 3 1 242 1155606 1155846 MAG: Dehalococcoidia bacterium isolate 99511b8e-fdeb-40b8-a9fc-769d5cc020c2 genome assembly, chromosome: 1 blastn 53881 257 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
23887151 23887151 PRJNA951412_P_NODE_3819_length_257_cov_3.065217_g3734_i0 PRJNA951412 3819 257 3.065217 7.87760769 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 298 2.72e-76   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g3734 i0 87.891 206 256 27 99 3 1 254 597000 597253 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 52942 298 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;