RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA951412 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12413940 12413940 PRJNA951412_P_NODE_7770_length_242_cov_0.923077_g7685_i0 PRJNA951412 7770 242 0.923077 2.23384634 Allomeiothermus silvanus 52022 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|296848933|gb|CP002042.1| 526227 g7685 i0 99.174 1 242 2 100 0 1 242 1309719 1309478 Meiothermus silvanus DSM 9946, complete genome blastn 242 436 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
17840210 17840210 PRJNA951412_P_NODE_5174_length_249_cov_0.886364_g5089_i0 PRJNA951412 5174 249 0.886364 2.20704636 Thermus 270 Bacteria Bacteria 460 3.16e-125   NTclustered gi|2199621017|dbj|AP025610.1| 274 g5089 i0 100 287.795180722892 249 0 100 0 1 249 208098 208346 Thermus thermophilus SNM3-3 plasmid pTthSNM3-3b DNA, complete sequence blastn 71661 460 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
20389071 20389071 PRJNA951412_P_NODE_3856_length_257_cov_1.206522_g3771_i0 PRJNA951412 3856 257 1.206522 3.10076154 root 1 Root_unresolved Root_unresolved 448 2.5499999999999995e-121   NTclustered gi|2264081587|gb|CP094462.1| 1299 g3771 i0 98.054 134.186770428016 257 5 100 0 1 257 919380 919636 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 34486 448 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;