RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA951412 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7312841 7312841 PRJNA951412_P_NODE_7446_length_243_cov_0.917647_g7361_i0 PRJNA951412 7446 243 0.917647 2.22988221 Fusobacterium polymorphum 76857 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2706407748|gb|CP077116.1| 76857 g7361 i0 100 99.7366255144033 243 0 100 0 1 243 1810581 1810823 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 24236 449 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
10191492 10191492 PRJNA951412_P_NODE_1208_length_407_cov_1.218563_g1123_i0 PRJNA951412 1208 407 1.218563 4.95955141 Fusobacterium 848 Bacteria Bacteria 719 0   NTclustered gi|1721134154|emb|LR698955.1| 851 g1123 i0 98.762 99.4742014742015 404 5 99 0 4 407 2084786 2084383 Fusobacterium nucleatum isolate MGYG-HGUT-01347 genome assembly, chromosome: 1 blastn 40486 719 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
23887168 23887168 PRJNA951412_P_NODE_4659_length_251_cov_0.870787_g4574_i0 PRJNA951412 4659 251 0.870787 2.18567537 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 276 1.24e-69   NTclustered gi|1276707709|gb|CP024699.1| 2663009 g4574 i0 94.444 167.772908366534 180 8 100 1 1 180 347727 347904 Fusobacterium pseudoperiodonticum strain KCOM 1261 chromosome, complete genome blastn 42111 276 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
23887198 23887198 PRJNA951412_P_NODE_6879_length_245_cov_0.889535_g6794_i0 PRJNA951412 6879 245 0.889535 2.17936075 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 442 1.1199999999999994e-119   NTclustered gi|1276718681|gb|CP024704.1| 2663009 g6794 i0 99.184 12 245 2 100 0 1 245 1707666 1707422 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome blastn 2940 442 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;