RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA951412 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4763130 4763130 PRJNA951412_P_NODE_1044_length_440_cov_2.790191_g959_i0 PRJNA951412 1044 440 2.790191 12.2768404 Monoraphidium neglectum 145388 Plants Plants 65.8 5.46e-6   NTclustered gi|926786903|ref|XM_014046472.1| 145388 g959 i0 93.182 0.1 44 3 10 0 395 438 470 427 Monoraphidium neglectum hypothetical protein mRNA blastn 44 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
6037923 6037923 PRJNA951412_P_NODE_3245_length_273_cov_3.455000_g3160_i0 PRJNA951412 3245 273 3.455 9.43215 Chlamydomonas sp. ICE-L 309537 Plants Plants 176 1.43e-39   NTclustered gi|1433048021|gb|MF780877.1| 309537 g3160 i0 84.971 61.2857142857143 173 26 63 0 101 273 16 188 Chlamydomonas sp. ICE-L heat shock protein 70A (HSP70A) mRNA, partial cds blastn 16731 176 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. ICE-L
8915544 8915544 PRJNA951412_P_NODE_3627_length_262_cov_2.962963_g3542_i0 PRJNA951412 3627 262 2.962963 7.76296306 Chlorophyta 3041 Plants Plants 213 1.04e-50   NTclustered gi|760444702|ref|XM_011401118.1| 3075 g3542 i0 85.644 57.8282442748092 202 29 77 0 61 262 124 325 Auxenochlorella protothecoides 40S ribosomal protein S23-2 partial mRNA blastn 15151 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
16237597 16237597 PRJNA951412_P_NODE_1873_length_335_cov_2.916031_g1788_i0 PRJNA951412 1873 335 2.916031 9.76870385 Chlorella variabilis 554065 Plants Plants 327 4.69e-85   NTclustered gi|552830805|ref|XM_005847928.1| 554065 g1788 i0 84.412 97.9731343283582 340 46 100 5 1 335 678 341 Chlorella variabilis hypothetical protein (RACK1) mRNA, complete cds blastn 32821 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
22611802 22611802 PRJNA951412_P_NODE_2818_length_287_cov_4.658879_g2733_i0 PRJNA951412 2818 287 4.658879 13.37098273 Volvox carteri 3067 Plants Plants 76.8 1.57e-9   NTclustered gi|302838673|ref|XM_002950849.1| 3068 g2733 i0 97.727 0.327526132404181 44 1 15 0 222 265 770 727 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl8), mRNA blastn 94 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
25160905 25160905 PRJNA951412_P_NODE_1700_length_348_cov_1.872727_g1615_i0 PRJNA951412 1700 348 1.872727 6.51708996 Chlamydomonas incerta 51695 Plants Plants 207 6.65e-49   NTclustered gi|74272614|gb|DQ122872.1| 51695 g1615 i0 82.231 5.77011494252874 242 41 69 2 106 346 693 453 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 2008 207 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;