RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA951412 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10191521 10191521 PRJNA951412_P_NODE_6208_length_246_cov_0.901734_g6123_i0 PRJNA951412 6208 246 0.901734 2.21826564 Botrimarina 2795782 Bacteria Bacteria 285 2.01e-72   NTclustered gi|1712768844|gb|CP036350.1| 2527962 g6123 i0 88.235 2.05691056910569 238 28 97 0 1 238 2133335 2133572 Planctomycetes bacterium K2D chromosome, complete genome blastn 506 285 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium K2D
11138431 11138431 PRJNA951412_P_NODE_2209_length_315_cov_1.115702_g2124_i0 PRJNA951412 2209 315 1.115702 3.5144613 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 58.4 6.34e-4   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g2124 i0 100 3.01269841269841 31 0 10 0 58 88 2594584 2594554 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 949 58.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
25160949 25160949 PRJNA951412_P_NODE_4780_length_250_cov_1.480226_g4695_i0 PRJNA951412 4780 250 1.480226 3.700565 uncultured Terrimicrobium sp. 1758082 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2518609723|gb|OR128325.1| 1758082 g4695 i0 100 99.888 250 0 100 0 1 250 290 41 Uncultured Terrimicrobium sp. clone 748a464ea190c92309074b4379e01e2e 16S ribosomal RNA gene, partial sequence blastn 24972 462 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium uncultured Terrimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;