RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA951412" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA951412 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4763143 4763143 PRJNA951412_P_NODE_2184_length_316_cov_2.049383_g2099_i0 PRJNA951412 2184 316 2.049383 6.47605028 Thecamonas trahens 529818 Root_unresolved Root_unresolved 97.1 1.35e-15   NTclustered gi|923132988|ref|XM_013904506.1| 461836 g2099 i0 84.536 0.306962025316456 97 15 31 0 211 307 420 324 Thecamonas trahens ATCC 50062 40S ribosomal protein S12 (AMSG_03618), mRNA blastn 97 97.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7312771 7312771 PRJNA951412_P_NODE_1426_length_374_cov_9.292359_g1341_i0 PRJNA951412 1426 374 9.292359 34.75342266 Karpovia croatica 2925417 Root_unresolved Root_unresolved 102 3.48e-17   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g1341 i0 87.64 16.3128342245989 89 9 24 2 24 111 6107 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6101 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
7312810 7312810 PRJNA951412_P_NODE_486_length_687_cov_4.566775_g404_i0 PRJNA951412 486 687 4.566775 31.37374425 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 1.85e-22   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g404 i0 81.818 0.308588064046579 143 26 21 0 408 550 290 148 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 212 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14962692 14962692 PRJNA951412_P_NODE_6552_length_245_cov_1.796512_g6467_i0 PRJNA951412 6552 245 1.796512 4.4014544 Thecamonas trahens 529818 Root_unresolved Root_unresolved 209 1.24e-49   NTclustered gi|923137048|ref|XM_013906535.1| 461836 g6467 i0 82.114 53.4244897959184 246 42 100 2 1 245 394 150 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_01386), mRNA blastn 13089 209 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;