RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA951388" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Viruses · 12 ✖

bioproject 1

  • PRJNA951388 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
934786 934786 PRJNA951388_S_NODE_8021_length_298_cov_5.871111_g7894_i0 PRJNA951388 8021 298 5.871111 17.49591078 Bromovirus BMV 3427622 Viruses Viruses 551 2.239999999999999e-152   NTclustered gi|2329659869|gb|OK558648.1| 12302 g7894 i0 100 37.8959731543624 298 0 100 0 1 298 817 1114 Brome mosaic virus isolate VRS-315 ORF1 and ORF2 genes, complete cds blastn 11293 551 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
6037873 6037873 PRJNA951388_S_NODE_10785_length_250_cov_1.096045_g10658_i0 PRJNA951388 10785 250 1.096045 2.7401125 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.002   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g10658 i0 100 0.232 30 0 12 0 1 30 13 42 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
6037888 6037888 PRJNA951388_S_NODE_3765_length_415_cov_18.944444_g3638_i0 PRJNA951388 3765 415 18.944444 78.6194426 Orthopoxvirus monkeypox 3431483 Viruses Viruses 54.7 0.011   NTclustered gi|2309594316|gb|OP536747.1| 10244 g3638 i0 100 6.98795180722892 29 0 7 0 74 102 119302 119274 Monkeypox virus isolate 9000365, partial genome blastn 2900 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Orthopoxvirus Orthopoxvirus monkeypox
9862750 9862750 PRJNA951388_S_NODE_2608_length_471_cov_33.608040_g2481_i0 PRJNA951388 2608 471 33.60804 158.2938684 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.013   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g2481 i0 100 0.121019108280255 29 0 6 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
9862760 9862760 PRJNA951388_S_NODE_4128_length_403_cov_11.709091_g4001_i0 PRJNA951388 4128 403 11.709091 47.18763673 Carlavirus latensdianthi 3427766 Viruses Viruses 58.4 8.31e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g4001 i0 100 0.387096774193548 31 0 8 0 1 31 13 43 Carnation latent virus isolate KL, complete genome blastn 156 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
12413830 12413830 PRJNA951388_S_NODE_11870_length_233_cov_4.756250_g11743_i0 PRJNA951388 11870 233 4.75625 11.0820625 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.006   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g11743 i0 100 0.244635193133047 29 0 12 0 205 233 34 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
12413840 12413840 PRJNA951388_S_NODE_2850_length_458_cov_8.706494_g2723_i0 PRJNA951388 2850 458 8.706494 39.87574252 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.003   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g2723 i0 94.444 0.262008733624454 36 2 8 0 423 458 91 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 120 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
13688405 13688405 PRJNA951388_S_NODE_5131_length_370_cov_7.404040_g5004_i0 PRJNA951388 5131 370 7.40404 27.394948 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.01   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g5004 i0 100 0.154054054054054 29 0 8 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
18786506 18786506 PRJNA951388_S_NODE_955_length_662_cov_4.198642_g840_i0 PRJNA951388 955 662 4.198642 27.79501004 Jujube closterovirus 1 3043313 Viruses Viruses 60.2 3.94e-4   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g840 i0 100 0.0483383685800604 32 0 5 0 631 662 37 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 32 60.2 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
20061395 20061395 PRJNA951388_S_NODE_13076_length_204_cov_6.290076_g12949_i0 PRJNA951388 13076 204 6.290076 12.831755039999999 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.001   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g12949 i0 100 0.563725490196078 30 0 15 0 175 204 85 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 115 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
20061397 20061397 PRJNA951388_S_NODE_1616_length_550_cov_27.492662_g1495_i0 PRJNA951388 1616 550 27.492662 151.209641 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.015   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g1495 i0 100 0.0527272727272727 29 0 5 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
21336816 21336816 PRJNA951388_S_NODE_177_length_1186_cov_114.204852_g116_i0 PRJNA951388 177 1186 114.204852 1354.46954472 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.034   NTclustered gi|1995060321|gb|MN450069.1| 12164 g116 i0 100 0.0244519392917369 29 0 2 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;