RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA951388" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951388 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6037873 6037873 PRJNA951388_S_NODE_10785_length_250_cov_1.096045_g10658_i0 PRJNA951388 10785 250 1.096045 2.7401125 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.002   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g10658 i0 100 0.232 30 0 12 0 1 30 13 42 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
12413840 12413840 PRJNA951388_S_NODE_2850_length_458_cov_8.706494_g2723_i0 PRJNA951388 2850 458 8.706494 39.87574252 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.003   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g2723 i0 94.444 0.262008733624454 36 2 8 0 423 458 91 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 120 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
13688405 13688405 PRJNA951388_S_NODE_5131_length_370_cov_7.404040_g5004_i0 PRJNA951388 5131 370 7.40404 27.394948 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.01   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g5004 i0 100 0.154054054054054 29 0 8 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
20061395 20061395 PRJNA951388_S_NODE_13076_length_204_cov_6.290076_g12949_i0 PRJNA951388 13076 204 6.290076 12.831755039999999 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.001   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g12949 i0 100 0.563725490196078 30 0 15 0 175 204 85 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 115 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;