RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA951388" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951388 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
934758 934758 PRJNA951388_S_NODE_11301_length_243_cov_1.358824_g11174_i0 PRJNA951388 11301 243 1.358824 3.30194232 Rhodococcus sp. DN22 357684 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2675877924|gb|CP133326.1| 357684 g11174 i0 100 48 243 0 100 0 1 243 4270423 4270181 Rhodococcus sp. DN22 strain strain DN22 chromosome, complete genome blastn 11664 449 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. DN22
3814796 3814796 PRJNA951388_S_NODE_3983_length_408_cov_2.591045_g3856_i0 PRJNA951388 3983 408 2.591045 10.5714636 Cutibacterium 1912216 Bacteria Bacteria 754 0   NTclustered gi|2548746222|gb|CP129004.1| 1747 g3856 i0 100 273.882352941176 408 0 100 0 1 408 608485 608892 Cutibacterium acnes strain EASDk81B chromosome, complete genome blastn 111744 754 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
7640721 7640721 PRJNA951388_S_NODE_11786_length_235_cov_2.364198_g11659_i0 PRJNA951388 11786 235 2.364198 5.5558653 Kocuria 57493 Bacteria Bacteria 435 1.79e-117   NTclustered gi|1540076968|emb|LR134391.1| 1275 g11659 i0 100 270.527659574468 235 0 100 0 1 235 1080204 1080438 Kocuria rosea strain NCTC7514 genome assembly, chromosome: 1 blastn 63574 435 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea
7640724 7640724 PRJNA951388_S_NODE_2646_length_469_cov_2.732323_g2519_i0 PRJNA951388 2646 469 2.732323 12.81459487 Corynebacterium 1716 Bacteria Bacteria 771 0   NTclustered gi|1958403034|gb|CP068165.1| 169292 g2519 i0 96.391 401.92750533049 471 12 100 5 1 469 400190 399723 Corynebacterium aurimucosum strain FDAARGOS_1110 chromosome, complete genome blastn 188504 771 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium aurimucosum
12413864 12413864 PRJNA951388_S_NODE_8930_length_280_cov_3.946860_g8803_i0 PRJNA951388 8930 280 3.94686 11.051208 Lawsonella clevelandensis 1528099 Bacteria Bacteria 484 2.15e-132   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g8803 i0 97.857 327.960714285714 280 6 100 0 1 280 552129 551850 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 91829 484 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
22940506 22940506 PRJNA951388_S_NODE_12538_length_219_cov_4.500000_g12411_i0 PRJNA951388 12538 219 4.5 9.855 Cutibacterium 1912216 Bacteria Bacteria 383 6.05e-102   NTclustered gi|1446500593|gb|CP031442.1| 1747 g12411 i0 98.182 239.936073059361 220 3 100 1 1 219 55619 55838 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 52546 383 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
22940520 22940520 PRJNA951388_S_NODE_8658_length_286_cov_1.784038_g8531_i0 PRJNA951388 8658 286 1.784038 5.10234868 Cellulomonas 1707 Bacteria Bacteria 529 1e-145   NTclustered gi|2571366987|gb|OR498076.1| 40001 g8531 i0 100 103 286 0 100 0 1 286 874 589 Cellulomonas sp. strain ATA003 16S ribosomal RNA gene, partial sequence blastn 29458 529 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;