RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA951388" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA951388 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20061411 20061411 PRJNA951388_S_NODE_3356_length_433_cov_9.388889_g3229_i0 PRJNA951388 3356 433 9.388889 40.65388937 Fusobacterium nucleatum 851 Bacteria Bacteria 52.8 0.042   NTclustered gi|2704972056|gb|CP077127.1| 851 g3229 i0 100 0.12933025404157 28 0 6 0 298 325 1472613 1472586 Fusobacterium nucleatum strain KCOM3503 chromosome, complete genome blastn 56 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22611759 22611759 PRJNA951388_S_NODE_5378_length_363_cov_5.917241_g5251_i0 PRJNA951388 5378 363 5.917241 21.47958483 Fusobacterium polymorphum 76857 Bacteria Bacteria 52.8 0.034   NTclustered gi|2706504035|gb|CP084159.1| 76857 g5251 i0 100 0.0771349862258953 28 0 8 0 322 349 2257647 2257674 Fusobacterium polymorphum strain KCOM1330 chromosome, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;